News Archive

### 2019

April 10-11 2019 I was in Chengdu (China), visiting the University of Electronic Science and Technology of China.

April 16-18 2019 I was in Utrecht (Netherlands) for the International Conference on One Health Antimicrobial Resistance (ICOHAR) talking about our dog microbiome work

### 2018

Sep 16-19 2018 I was in Heidelberg for the Human Microbiome Conference

Nov 22-24 2017 I was in Schwarzenber, Switzerland for the Autumn School "Machine Learning applied to Systems Biology". I also visited the University of Bern and presented my scientific work.

June 26-29 2018: Ireland IHMC2018: International Human Microbiome Consortium

June 14 2018: I taught the Introduction to Python lecture at the Lisbon (Portugal) Machine Learning Summer School

### 2017

Oct 24-26 2017 I was in Copenhagen teaching people how to use ngless at the Microbiome data interpretation workshop (slides here) and giving a scientific talk on my work.

Sept 12-13 2017 I was in Delft 12-13** for a workshop on data-driven cell factory and community design

July 21-25 2017 I was in Prague for ECCB/ISMB 2017 with a poster on NGLess

21-28 July 2016 I was in Lisbon for the 2016 edition of the Lisbon Machine Learning Summer School, presenting a tutorial on the first day

26-29 April 2016 I attended the Sloan Early Career Workshop on the Microbiology of the Built Environment in Chicago.

17 April 2016 I gave an invited keynote in Florence ate PYCON Sette

21-26 February 2016 I was New Orleans for the 2016 Ocean Sciences Meeting. I presented a poster on our metagenomics work and gave a talk on our environmental imaging work

16 July 2015 I taught at the Lisbon Machine Learning School

15-17 June 2015 I was in beautiful San Sebastian (Spain) for a software carpentry workshop (and some holiday time).

2 June 2015 I attended the Science of TARA Oceans conference in Paris

22 May 2015 Paper out in Science

March 31-April 2 2015 I attended the International Human Microbiome Congress (IHMC) in Luxembourg

March 2015 Paper accepted in Bioinformatics

February 2015 I was in Granada for the 2015 Aquatic Sciences Meeting, giving a talk on the 26th on our metagenomics work

November 2014 I was the lead organizer for a software carpentry workshop at EMBL.

October 22 2014 O'Reilly webcast on Penalised Regression in Python

September 2014 Keynote talk in Python San Sebastien [Online talk]

September 2014 Speaking at TCMM2014

July 2014 Progression (in which I played the character Luis) has been released at New Filmmakers in NYC.

July 2014 Speaking at Lisbon Machine Learning School (LxMLS) 2014.

July 2014 New paper: Pena et al., Trypanosoma brucei histone H1 inhibits RNA polymerase I transcription and is important for parasite fitness in vivo in Molecular Microbiology [DOI].

June 2014 I will be teaching at a software carpentry workshop in Cyprus and Amman (Jordan).

April 2014 Traveling to University of Southern Denmark for a software carpentry bootcamp.

February 2014 I'm now a certified Software Carpentry instructor

January 2014 New publication: Kristoffer Forslund, Shinichi Sunagawa, Luis P. Coelho, Peer Bork, Metagenomic insights into the human gut resistome and the forces that shape it in Bioessays (2014). [DOI]

December 2013 New publication: Peter Liehl et al., Host-cell sensors for Plasmodium activate innate immunity against liver-stage infection in Nature Medicine 20, 47–53 (2014) [DOI]

November 2013 I attended the CFAR New York workshop

November 2013 I'm a member of the programme committee for DILS 2014 (10th International Conference on Data Integration in the Life Sciences)

October 2013 New publication: Shinichi Sunagawa et al., Metagenomic species profiling using universal phylogenetic marker genes in Nature Methods 10, 1196–1199 (2013) [Abstract] [DOI]

July 2013 I got a prize in the ICSB Computational Biology Wikipedia Competition for work on the Bioimage Informatics page

July 2013 My book Building Machine Learning Systems with Python is now published

July 2013 I posted a video abstract of my recent paper on subcellular location generalization

July 2013 I have a new paper out: Luis Pedro Coelho, Joshua D. Kangas, Armaghan Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, and Robert F. Murphy, Determining the subcellular location of new proteins from microscope images using local features in Bioinformatics, 2013 [Advanced Access]

May 2013 I started a research blog:

May 2013 My talk submission for BOSC (Bioinformatics Open Source Conference) about jug was accepted (it will be a lightning talk)

April 2013 I moved to EMBL, where I joined Peer Bork's group.

March 2013 I am part of the organizing committee for the 2013 edition of the Lisbon Machine Learning School

November 2012 I have a new manuscript up at the arXiv on my computer vision software, mahotas [Update in 2013: this is now a peer-reviewed journal paper]

September 2012 I am teaching two session of a Programming for Scientists Course at IMM.

May 2012 I am writing a book

January 2012 I am now based in Lisbon at IMM in Musa Mhlanga's lab.

November 2011 I start work as a postdoctoral researcher at Musa Mhlanga's lab.

October 2011 I graduated from Carnegie Mellon University with a PhD in computational biology!

September 2011 I was chosen as a 2012 Siebel Scholar