EAO Seminar

Research Papers

  1. Luis Pedro Coelho, Tao Peng, and Robert F. Murphy, Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing in Bioinformatics, vol. 26(12), pp. i7-i12 [online version]
  2. Luis Pedro Coelho, Aabid Shariff, and Robert F. Murphy; Nuclear segmentation in microscope cell images: A hand-segmented dataset and comparison of algorithms ISBI 2009 [DOI]
  3. Determining the distribution of probes between different subcellular locations through automated unmixing of subcellular patterns by Tao Peng, Ghislain M. C. Bonamy, Estelle Glory-Afshar, Daniel R. Rines, Sumit K. Chanda, and Robert F. Murphy [link]
  4. M. V. Boland, M. K. Markey and R. F. Murphy (1998) Automated Recognition of Patterns Characteristic of Subcellular Structures in Fluorescence Microscopy Images. Cytometry 33: 366-375. [online version]
  5. Latent Dirichlet Allocation, Blei et al ., JMLR (3), 2003 [online version]


These are both very short. They give a general idea of the field, but you should follow the references.

  1. Luis Pedro Coelho, Estelle Glory-Afshar, Joshua Kangas, Shannon Quinn, Aabid Shariff, and Robert F. Murphy; Principles of Bioimage Informatics: Focus on machine learning of cell patterns in Lecture Notes in Computer Science [PDF Version].
  2. Aabid Shariff, Joshua Kangas, Luis Pedro Coelho, Shannon Quinn, and Robert F. Murphy; Automated Image Analysis for High Content Screening and Analysis, Journal Biomolecular Screening (2010) [online version]