These datasets in bioimage informatics were part of publications which required them and were labeled by myself and co-authors.

Subcellular location determination

This is a pair of image classification dataset, consisting of imgaes of fluorescently tagged proteins in NIH 3T3 cells.


Determining the subcellular location of new proteins from microscope images using local features by Luis Pedro Coelho, Joshua D. Kangas, Armaghan Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, and Robert F. Murphy (2013). Bioinformatics, [DOI]

Download from Data Dryad

Nuclear segmentation

This is a hand-labeled dataset of image segmentations.


Nuclear segmentation in microscope cell images: A hand-segmented dataset and comparison of algorithms by Luis Pedro Coelho, Aabid Shariff, and Robert F. Murphy [DOI 10.1109/ISBI.2009.5193098]

Download from github (with source)