News Archive

July 2014 Speaking at Lisbon Machine Learning School (LxMLS) 2014.

June 2014 I will be teaching at a software carpentry workshop in Cyprus and Amman (Jordan).

April 2014 Traveling to University of Southern Denmark for a software carpentry bootcamp.

February 2014 I'm now a certified Software Carpentry instructor

January 2014 New publication: Kristoffer Forslund, Shinichi Sunagawa, Luis P. Coelho, Peer Bork, Metagenomic insights into the human gut resistome and the forces that shape it in Bioessays (2014). [DOI]

December 2013 New publication: Peter Liehl et al., Host-cell sensors for Plasmodium activate innate immunity against liver-stage infection in Nature Medicine 20, 47–53 (2014) [DOI]

November 2013 I attended the CFAR New York workshop

November 2013 I'm a member of the programme committee for DILS 2014 (10th International Conference on Data Integration in the Life Sciences)

October 2013 New publication: Shinichi Sunagawa et al., Metagenomic species profiling using universal phylogenetic marker genes in Nature Methods 10, 1196–1199 (2013) [Abstract] [DOI]

July 2013 I got a prize in the ICSB Computational Biology Wikipedia Competition for work on the Bioimage Informatics page

July 2013 My book Building Machine Learning Systems with Python is now published

July 2013 I posted a video abstract of my recent paper on subcellular location generalization

July 2013 I have a new paper out: Luis Pedro Coelho, Joshua D. Kangas, Armaghan Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, and Robert F. Murphy, Determining the subcellular location of new proteins from microscope images using local features in Bioinformatics, 2013 [Advanced Access]

May 2013 I started a research blog: metarabbit.wordpress.com

May 2013 My talk submission for BOSC (Bioinformatics Open Source Conference) about jug was accepted (it will be a lightning talk)

April 2013 I moved to EMBL, where I joined Peer Bork's group.

March 2013 I am part of the organizing committee for the 2013 edition of the Lisbon Machine Learning School

November 2012 I have a new manuscript up at the arXiv on my computer vision software, mahotas [Update in 2013: this is now a peer-reviewed journal paper]

September 2012 I am teaching two session of a Programming for Scientists Course at IMM.

May 2012 I am writing a book

January 2012 I am now based in Lisbon at IMM in Musa Mhlanga's lab.

November 2011 I start work as a postdoctoral researcher at Musa Mhlanga's lab.

October 2011 I graduated from Carnegie Mellon University with a PhD in computational biology!

September 2011 I was chosen as a 2012 Siebel Scholar

Article filed in categories: Personal